ipSAE
Score predicted binder interfaces with ipSAE.
Results
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Method & evidence
Score predicted interfaces with ipSAE v4 using complex structures and per-token PAE.
Scope & limitations
- Use PAE from the same prediction as the complex structure.
Interpreting results
- Higher ipSAE can support prioritization within a consistently predicted target cohort.
- Calibrate scores within target and prediction method; avoid assuming one global threshold.
- ipSAE is confidence-derived evidence, not an affinity measurement.
References
Input requirements & outputs
Input checks
- PDB or mmCIF predicted complex
- Matching per-token PAE in JSON or NPZ format
- Up to 25 rows in one native batch
Expected results
- Directional interface score table — Compare every chain-pair ipSAE metric without collapsing directionality.
- Score details — Tool version, cutoffs, and per-row results or failures.
